Before the war between the humans and the First Civilisation (FC), The FC were weak, and very little in numbers. To prevent the race from dying the FC tried breeding with a humans who gave birth to two children. The babes, however, contained both FC and human DNA, thus a half and half. The twins, who later became Adam and Eve, contained the FC gene and were immune to the mind control affects of the Apple.
When the FC used the Apple to control the humans and provide slave labour for them, Adam and Eve possessed the ability to resist and escape with the Ezio's Apple. The truth video featured in Assassin's Creed II showed Adam and Eve fleeing Eden with the apple whilst being pursued by a member of The FC (Presumably Juno because The Apple wa…
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